Co-expression analysis

Gene ID	Contig5465_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=2e-4)
Module size	6 genes
NF	0.29
%ile	38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.94	Contig5465_at	Contig5465	-	-	2e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig18674_at	Contig18674	-	-	5e-1	At1g67050	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig14639_at	Contig14639	-	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig15745_at	Contig15745	-	-	1e-1	At1g35830	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig514_s_at	Contig514	ribosome-inactivating protein	-	5e-4	At5g15265	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig21054_at	Contig21054	-	-	8e-9	At4g27270	quinone reductase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.9	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
26.1	99.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.5	99.8	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
16.1	99.6	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.7	98.9	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.7	98.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.7	98.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.6	98.6	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.4	98.5	GSM311204	28-4_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.4	98.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12797.1.S1_at, orthologous to the query gene, Contig5465_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	Ta.12797.1.S1_at	At5g60460	-	-	4e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.12797.1.S1_x_at	At5g60460	-	-	4e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.13749.1.S1_x_at	At5g60460	-	-	2e-4	At1g60740	peroxiredoxin type 2, putative	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.28745.1.S1_x_at	At5g60460	-	-	2e-14	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.30750.1.S1_at	At5g60460	-	-	7e-4	At5g56020	-	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.129513.2.A1_x_at	At5g60460	-	-	5e-18	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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