CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5465_at

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=2e-4)

Module size 6 genes

NF 0.29

%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 0.94 Contig5465_at Contig5465 - - 2e-4 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.33 42.6 0.94 Contig18674_at Contig18674 - - 5e-1 At1g67050 unknown protein O.I. H.G. S.X.
0.23 26.1 0.95 Contig14639_at Contig14639 - - 8e+0 At5g47175 LCR3 (Low-molecular-weight cysteine-rich 3) O.I. H.G. S.X.
0.22 24.2 0.95 Contig15745_at Contig15745 - - 1e-1 At1g35830 VQ motif-containing protein O.I. H.G. S.X.
0.20 21.1 0.95 Contig514_s_at Contig514 ribosome-inactivating protein - 5e-4 At5g15265 unknown protein O.I. H.G. S.X.
0.17 16.9 0.95 Contig21054_at Contig21054 - - 8e-9 At4g27270 quinone reductase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.9 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
26.1 99.8 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
21.5 99.8 GSM311254 hsp5_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
16.1 99.6 GSM311255 hsp5_with_aphids_3 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.7 98.9 GSM311205 28-4_with_aphids_2 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
7.7 98.6 GSM419983 Seed_Rep3 GSE16754 Comparative transcriptional profiling of organs of the barley spike
7.7 98.6 GSM440977 Control seed_Rep3 GSE17669 Gene expression in the barley spike during drought stress
7.6 98.6 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.4 98.5 GSM311204 28-4_with_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.4 98.1 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os12g0103300, orthologous to the query gene, Contig5465_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os12g0103300 At5g60460 - Protein transport protein SEC61 beta subunit 4e-3 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.50 68.0 Os09g0541500 At5g60460 - Longin-like domain containing protein 3e-29 At2g20930 - O.I. H.G. S.X.
0.27 27.5 Os05g0474400 At5g60460 - - 6e-1 At3g56110 PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1) O.I. H.G. S.X.
0.17 12.6 Os08g0248900 At5g60460 - ADP-ribosylation factor 3 2e-46 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) O.I. H.G. S.X.
0.17 12.6 Os12g0207300 At5g60460 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative O.I. H.G. S.X.
0.11 6.5 Os11g0181100 At5g60460 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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