Co-expression analysis

Gene ID	Contig5399_at
Gene name
Homology with Arabidopsis	Similar to At2g20860: LIP1 (LIPOIC ACID SYNTHASE 1) (HF=4e-27)
Module size	6 genes
NF	0.38
%ile	51.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.94	Contig5399_at	Contig5399	-	-	4e-27	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	HD07I22r_s_at	HD07I22r	-	-	5e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig3810_at	Contig3810	-	-	3e-18	At1g09350	AtGolS3 (Arabidopsis thaliana galactinol synthase 3)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig12013_s_at	Contig12013	-	-	3e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig3338_s_at	Contig3338	-	-	8e-4	At3g23080	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig7559_at	Contig7559	-	-	4e-43	At3g26560	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.4	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.3	99.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.3	98.8	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.3	98.1	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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