Co-expression analysis

Gene ID Contig5396_at
Gene name
Homology with ArabidopsisSimilar to At5g56140: KH domain-containing protein (HF=2e-23)
Module size 6 genes
NF 0.02
%ile 2.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.81Contig5396_atContig5396--2e-23At5g56140KH domain-containing proteinO.I.H.G.S.X.
0.2935.50.84HZ46H23r_s_atHZ46H23r--3e+0At5g58590RANBP1 (RAN BINDING PROTEIN 1)O.I.H.G.S.X.
0.1311.60.82Contig7538_atContig7538--8e-11At5g14420RGLG2 (RING domain Ligase2)O.I.H.G.S.X.
0.032.60.81Contig7752_atContig7752--9e-1At4g18940cyclic phosphodiesterase, putativeO.I.H.G.S.X.
0.032.60.82Contig15080_atContig15080--2e+0At5g15265unknown proteinO.I.H.G.S.X.
-0.20.81Contig9757_atContig9757--9e-16At3g04060anac046 (Arabidopsis NAC domain containing protein 46)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.599.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.899.2GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.198.9GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.897.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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