Co-expression analysis

Gene ID	Contig5369_at
Gene name
Homology with Arabidopsis	Similar to At3g46150: unknown protein (HF=1e-1)
Module size	6 genes
NF	0.49
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig14955_at	Contig14955	-	-	7e-2	At4g33870	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig9248_s_at	Contig9248	-	-	1e+0	At3g15110	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	HS17M12u_s_at	HS17M12u	-	-	4e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.7	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
14.0	99.5	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.0	99.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.7	95.5	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage