Co-expression analysis

Gene ID	Contig5347_at
Gene name
Homology with Arabidopsis	Similar to At1g17770: SUVH7 (SU(VAR)3-9 HOMOLOG 7) (HF=1e-3)
Module size	13 genes
NF	0.40
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig5347_at	Contig5347	-	-	1e-3	At1g17770	SUVH7 (SU(VAR)3-9 HOMOLOG 7)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	Contig6963_at	Contig6963	-	-	5e-11	At5g02240	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig5839_at	Contig5839	-	-	4e-1	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig7107_at	Contig7107	-	-	2e-1	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig20359_at	Contig20359	-	-	2e+0	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig18044_at	Contig18044	-	-	1e+0	At3g47070	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	HI05P18u_s_at	HI05P18u	-	-	4e+0	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.1	94.1	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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