CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5341_at

Gene name
Homology with Arabidopsis Similar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)

Module size 6 genes

NF 0.19

%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.94 Contig5341_at Contig5341 - - 8e-4 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.38 49.5 0.94 Contig13883_at Contig13883 - - 2e+0 At3g17140 invertase inhibitor-related O.I. H.G. S.X.
0.38 49.5 0.94 Contig3711_at Contig3711 - - 2e-26 At1g79600 ABC1 family protein O.I. H.G. S.X.
0.15 14.1 0.94 Contig412_x_at Contig412 - - 1e-3 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.13 11.6 0.94 Contig4506_at Contig4506 - - 6e+0 At4g02725 unknown protein O.I. H.G. S.X.
0.09 7.4 0.94 Contig9715_s_at Contig9715 - - 8e+0 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.91	Contig15197_at	Contig15197	-	-	7e-3	At2g26190	calmodulin-binding family protein	O.I.	H.G.	S.X.
0.53	69.7	0.93	Contig5384_at	Contig5384	-	-	6e-1	At5g10070	RNase L inhibitor protein-related	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig11751_at	Contig11751	-	-	1e-4	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	O.I.	H.G.	S.X.
0.42	55.2	0.94	Contig3710_at	Contig3710	-	-	1e-3	At4g26620	sucrase-related	O.I.	H.G.	S.X.
0.40	53.1	0.93	Contig12553_at	Contig12553	-	-	8e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig8876_at	Contig8876	-	-	2e+0	At3g25577	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.90	Contig2157_at	Contig2157	-	-	1e-12	At4g32890	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.36	47.1	0.92	HU09D18u_s_at	HU09D18u	nucellin-like aspartic protease-like	-	3e+0	At3g50460	HR2 (HOMOLOG OF RPW8 2)	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig10513_at	Contig10513	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.
0.32	40.3	0.92	Contig17168_at	Contig17168	-	-	1e+0	At4g27250	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	O.I.	H.G.	S.X.
0.31	38.6	0.92	HVSMEa0007I03r2_at	HVSMEa0007I03r2	-	-	5e-3	At5g20400	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.31	38.6	0.93	Contig9345_at	Contig9345	-	-	1e-6	At1g27330	-	O.I.	H.G.	S.X.
0.29	35.5	0.91	Contig1019_at	Contig1019	-	-	2e-79	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.
0.29	35.5	0.92	rbaal40l24_s_at	rbaal40l24	-	-	2e+0	At1g31319	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig17097_at	Contig17097	-	-	8e-3	At4g39870	-	O.I.	H.G.	S.X.
0.29	35.5	0.94	Contig10456_at	Contig10456	-	-	1e+1	At5g19473	-	O.I.	H.G.	S.X.
0.25	28.9	0.89	Contig7690_at	Contig7690	-	-	2e-3	At1g64980	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig9168_s_at	Contig9168	-	-	4e-26	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM398278 Moroc9-75_1d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5 96.7 GSM398277 Moroc9-75_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9 95.8 GSM398276 Moroc9-75_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8 95.7 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1 94.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
3.0 93.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0 93.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
2.8 93.1 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
2.6 92.3 GSM281746 Genotype: Steptoe - rep2 GSE11182 Steptoe x Morex seedling leaf comparison
2.5 91.9 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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