CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5341_at

Gene name
Homology with Arabidopsis Similar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)

Module size 6 genes

NF 0.19

%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.94 Contig5341_at Contig5341 - - 8e-4 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.38 49.5 0.94 Contig13883_at Contig13883 - - 2e+0 At3g17140 invertase inhibitor-related O.I. H.G. S.X.
0.38 49.5 0.94 Contig3711_at Contig3711 - - 2e-26 At1g79600 ABC1 family protein O.I. H.G. S.X.
0.15 14.1 0.94 Contig412_x_at Contig412 - - 1e-3 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.13 11.6 0.94 Contig4506_at Contig4506 - - 6e+0 At4g02725 unknown protein O.I. H.G. S.X.
0.09 7.4 0.94 Contig9715_s_at Contig9715 - - 8e+0 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 97.2 GSM398278 Moroc9-75_1d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5 96.7 GSM398277 Moroc9-75_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9 95.8 GSM398276 Moroc9-75_1d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8 95.7 GSM398280 Moroc9-75_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1 94.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
3.0 93.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0 93.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
2.8 93.1 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
2.6 92.3 GSM281746 Genotype: Steptoe - rep2 GSE11182 Steptoe x Morex seedling leaf comparison
2.5 91.9 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1614655_at, orthologous to the query gene, Contig5341_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 1614655_at At5g45930 hypothetical protein LOC100267459 - 2e-61 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.86 95.1 1609228_at At5g45930 hypothetical protein LOC100247047 - 9e-5 At2g21385 unknown protein O.I. H.G. S.X.
0.82 93.9 1617061_s_at At5g45930 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein O.I. H.G. S.X.
0.71 89.5 1610716_at At5g45930 hypothetical protein LOC100265925 - 5e-16 At3g15190 chloroplast 30S ribosomal protein S20, putative O.I. H.G. S.X.
0.71 89.5 1615609_at At5g45930 hypothetical protein LOC100268043 - 1e-11 At3g25920 RPL15 O.I. H.G. S.X.
0.71 89.5 1606797_at At5g45930 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein O.I. H.G. S.X.
0.67 87.9 1620684_at At5g45930 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.
0.53 75.2 1622495_at At5g45930 hypothetical protein LOC100248841 - 4e-26 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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