Co-expression analysis

Gene ID Contig5341_at
Gene name
Homology with ArabidopsisSimilar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)
Module size 6 genes
NF 0.19
%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig5341_atContig5341--8e-4At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.3849.50.94Contig13883_atContig13883--2e+0At3g17140invertase inhibitor-relatedO.I.H.G.S.X.
0.3849.50.94Contig3711_atContig3711--2e-26At1g79600ABC1 family proteinO.I.H.G.S.X.
0.1514.10.94Contig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.1311.60.94Contig4506_atContig4506--6e+0At4g02725unknown proteinO.I.H.G.S.X.
0.097.40.94Contig9715_s_atContig9715--8e+0At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.097.2GSM398278Moroc9-75_1d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.596.7GSM398277Moroc9-75_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM398276Moroc9-75_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.895.7GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
2.591.9GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1511.2.S1_x_at, orthologous to the query gene, Contig5341_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8092.2Ta.1511.2.S1_x_atAt5g45930--8e-7At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.9198.2Ta.1511.1.S1_x_atAt5g45930--4e-3At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.8092.2Ta.1979.1.S1_a_atAt5g45930--2e-1At4g24770RBP31 (31-KDA RNA BINDING PROTEIN)O.I.H.G.S.X.
0.7389.1Ta.20947.1.S1_a_atAt5g45930--2e-6At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.
0.6786.3TaAffx.104781.1.S1_s_atAt5g45930--1e+0At2g24390-O.I.H.G.S.X.
0.5374.9Ta.1511.1.S1_a_atAt5g45930--4e-3At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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