Co-expression analysis

Gene ID Contig5341_at
Gene name
Homology with ArabidopsisSimilar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)
Module size 6 genes
NF 0.19
%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig5341_atContig5341--8e-4At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.3849.50.94Contig13883_atContig13883--2e+0At3g17140invertase inhibitor-relatedO.I.H.G.S.X.
0.3849.50.94Contig3711_atContig3711--2e-26At1g79600ABC1 family proteinO.I.H.G.S.X.
0.1514.10.94Contig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.1311.60.94Contig4506_atContig4506--6e+0At4g02725unknown proteinO.I.H.G.S.X.
0.097.40.94Contig9715_s_atContig9715--8e+0At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.097.2GSM398278Moroc9-75_1d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.596.7GSM398277Moroc9-75_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM398276Moroc9-75_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.895.7GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
2.591.9GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0563300, orthologous to the query gene, Contig5341_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os03g0563300At5g45930-Magnesium-chelatase subunit chlI, chloroplastprecursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase)(Protein CS/CH-42)1e-31At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.7591.9Os05g0232200At5g45930-Conserved hypothetical protein3e+0At5g15190unknown proteinO.I.H.G.S.X.
0.5777.0Os05g0488600At5g45930-Myb, DNA-binding domain containing protein2e-25At3g04030myb family transcription factorO.I.H.G.S.X.
0.4660.9Os10g0572100At5g45930-Protein of unknown function UPF0005 family protein3e-4At5g46610unknown proteinO.I.H.G.S.X.
0.3846.9Os02g0697900At5g45930-Hypothetical protein4e-27At1g32060PRK (PHOSPHORIBULOKINASE)O.I.H.G.S.X.
0.3644.0Os10g0356366At5g45930--3e-30Atcg00510-O.I.H.G.S.X.
0.3338.8Os06g0108900At5g45930-Homeobox domain containing protein1e-12At5g41410BEL1 (BELL 1)O.I.H.G.S.X.
0.2931.1Os12g0292900At5g45930-ATP-binding region, ATPase-like domain containingprotein5e-6At1g67840CSK (CHLOROPLAST SENSOR KINASE)O.I.H.G.S.X.
0.2422.4Os08g0130400At5g45930-Hypothetical protein9e-1At1g30520AAE14 (Acyl-Activating Enzyme 14)O.I.H.G.S.X.
0.2321.2Os04g0462300At5g45930-Conserved hypothetical protein4e-2At3g25805unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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