Co-expression analysis

Gene ID	Contig5341_at
Gene name
Homology with Arabidopsis	Similar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)
Module size	6 genes
NF	0.19
%ile	22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig5341_at	Contig5341	-	-	8e-4	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig13883_at	Contig13883	-	-	2e+0	At3g17140	invertase inhibitor-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig3711_at	Contig3711	-	-	2e-26	At1g79600	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig412_x_at	Contig412	-	-	1e-3	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig4506_at	Contig4506	-	-	6e+0	At4g02725	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.94	Contig9715_s_at	Contig9715	-	-	8e+0	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.2	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.1	94.1	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.0	93.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.6	92.3	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
2.5	91.9	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.73108.1.S1_at, orthologous to the query gene, Contig5341_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	91.7	GmaAffx.73108.1.S1_at	At5g45930	-	-	1e-28	At4g18480	CHLI1	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.33373.1.A1_at	At5g45930	-	-	5e+0	At3g06040	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.16736.1.S1_at	At5g45930	-	-	8e-36	At1g33810	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.10125.2.S1_at	At5g45930	-	-	2e-1	At3g02460	plant adhesion molecule, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.63547.1.S1_at	At5g45930	-	-	3e-13	At4g37040	MAP1D (METHIONINE AMINOPEPTIDASE 1D)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.16753.2.S1_a_at	At5g45930	-	-	4e-4	At1g11750	CLPP6	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.13488.1.S1_at	At5g45930	-	-	1e-6	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.6377.1.S1_at	At5g45930	-	-	2e-1	At1g52825	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.12104.2.S1_s_at	At5g45930	-	-	4e-9	At1g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.13391.1.A1_at	At5g45930	-	-	2e-6	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.3700.3.S1_at	At5g45930	-	-	9e-1	At1g68380	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.55744.1.S1_s_at	At5g45930	-	-	3e-13	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.85710.1.S1_at	At5g45930	-	-	1e-12	At1g49970	CLPR1	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.3700.1.S1_at	At5g45930	-	-	2e-3	At2g44870	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.2654.1.S1_at	At5g45930	-	-	5e-63	At2g43945	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.82079.1.S1_at	At5g45930	-	-	1e-7	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.57302.1.S1_at	At5g45930	-	-	1e+0	At4g13395	RTFL12 (ROTUNDIFOLIA LIKE 12)	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.66870.1.S1_at	At5g45930	-	-	2e-5	At3g06980	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.17650.1.S1_at	At5g45930	homogentisate phytyltransferase VTE2-2	-	3e-44	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.13877.1.A1_at	At5g45930	-	-	2e-27	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage