Co-expression analysis

Gene ID Contig5341_at
Gene name
Homology with ArabidopsisSimilar to At5g45930: CHLI2 (MAGNESIUM CHELATASE I2) (HF=8e-4)
Module size 6 genes
NF 0.19
%ile 22.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig5341_atContig5341--8e-4At5g45930CHLI2 (MAGNESIUM CHELATASE I2)O.I.H.G.S.X.
0.3849.50.94Contig13883_atContig13883--2e+0At3g17140invertase inhibitor-relatedO.I.H.G.S.X.
0.3849.50.94Contig3711_atContig3711--2e-26At1g79600ABC1 family proteinO.I.H.G.S.X.
0.1514.10.94Contig412_x_atContig412--1e-3At4g27230HTA2 (histone H2A)O.I.H.G.S.X.
0.1311.60.94Contig4506_atContig4506--6e+0At4g02725unknown proteinO.I.H.G.S.X.
0.097.40.94Contig9715_s_atContig9715--8e+0At4g35350XCP1 (XYLEM CYSTEINE PEPTIDASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.097.2GSM398278Moroc9-75_1d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.596.7GSM398277Moroc9-75_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.995.8GSM398276Moroc9-75_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.895.7GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.093.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.893.1GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
2.692.3GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
2.591.9GSM282039Malting_day4_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g45930, orthologous to the query gene, Contig5341_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7888.6At5g45930834633CHLI2 (MAGNESIUM CHELATASE I2)encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.O.I.H.G.S.X.
0.9095.1At2g3345081791050S ribosomal protein L28, chloroplast (CL28)F:structural constituent of ribosome;P:translation;C:ribosome, chloroplast, membrane;BOPFO.I.H.G.S.X.
0.8894.0At5g47190834765ribosomal protein L19 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.8894.0At2g24090816943ribosomal protein L35 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOPMFO.I.H.G.S.X.
0.8793.5At1g79850844324RPS17 (RIBOSOMAL PROTEIN S17)nuclear-encoded 30S chloroplast ribosomal protein S17O.I.H.G.S.X.
0.8693.1At1g78630844199emb1473 (embryo defective 1473)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAPO.I.H.G.S.X.
0.8491.9At1g64510842759ribosomal protein S6 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:thylakoid, chloroplast thylakoid membrane, ribosome, chloroplast;BOPO.I.H.G.S.X.
0.8491.9At1g48350841255ribosomal protein L18 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast envelope;BOPMO.I.H.G.S.X.
0.8491.9At3g15190820750chloroplast 30S ribosomal protein S20, putativeF:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, chloroplast stroma, chloroplast, membrane;BOPMO.I.H.G.S.X.
0.8391.4At5g14910831343heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.H.G.S.X.
0.8290.9At1g07320837243RPL4encodes a plastid ribosomal protein L4O.I.H.G.S.X.
0.8190.4At4g01310827947ribosomal protein L5 family proteinF:structural constituent of ribosome;P:translation;C:in 6 components;BOPAFMO.I.H.G.S.X.
0.8190.4At1g3568084047250S ribosomal protein L21, chloroplast / CL21 (RPL21)F:structural constituent of ribosome, RNA binding;P:response to cold, translation;C:ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope;BOPMFO.I.H.G.S.X.
0.8089.8At2g33800817947ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:response to cadmium ion, response to cold, translation;C:in 8 components;BOMAFPO.I.H.G.S.X.
0.7989.1At1g74970843836RPS9 (RIBOSOMAL PROTEIN S9)ribosomal protein S9, nuclear encoded component of the chloroplast ribosomeO.I.H.G.S.X.
0.7888.6At1g05190839273emb2394 (embryo defective 2394)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPMO.I.H.G.S.X.
0.7888.6At2g43030818905ribosomal protein L3 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast stroma, chloroplast, membrane;BOAMFPO.I.H.G.S.X.
0.7788.0At5g08280830724HEMC (HYDROXYMETHYLBILANE SYNTHASE)Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.O.I.H.G.S.X.
0.7586.9At3g54210824588ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, chloroplast;BOMFPO.I.H.G.S.X.
0.7486.1At4g24770828579RBP31 (31-KDA RNA BINDING PROTEIN)Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).O.I.H.G.S.X.
0.7486.1At4g18480827580CHLI1Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. All four cysteine residues of the protein form two disulfide bonds (Cys102-Cys193 and Cys354-Cys396) under oxidized conditions but are fully reduced by reduction. It was suggested that the redox state of CHLI is regulated in vivo by the change of the redox environment in the chloroplasts probably via the Trx system.O.I.H.G.S.X.
0.7486.1At1g68590843189plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeF:structural constituent of ribosome;P:translation;C:thylakoid, chloroplast thylakoid membrane, chloroplast;OBPO.I.H.G.S.X.
0.7385.5At1g29070839781ribosomal protein L34 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;BPOFO.I.H.G.S.X.
0.7385.5At3g08740820021elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:chloroplast, chloroplast stroma;BOPAO.I.H.G.S.X.
0.7184.2At3g26060822203ATPRX Qencodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatusO.I.H.G.S.X.
0.7184.2At1g50900841512-F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;POO.I.H.G.S.X.
0.7184.2At5g13510831195ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, ribosome, chloroplast, chloroplast stroma;BOAPMFO.I.H.G.S.X.
0.7184.2At5g1432083128230S ribosomal protein S13, chloroplast (CS13)F:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:small ribosomal subunit, chloroplast, chloroplast envelope;BOPMFAO.I.H.G.S.X.
0.7083.5At3g63190825494RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)F:molecular_function unknown;P:defense response to bacterium, translation;C:thylakoid, chloroplast stroma, chloroplast;BOMPFO.I.H.G.S.X.
0.7083.5At1g32990840194PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11O.I.H.G.S.X.
0.6982.9At1g75350843871emb2184 (embryo defective 2184)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:ribosome, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.H.G.S.X.
0.6781.6At5g11450831016oxygen-evolving complex-relatedF:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;PBO.I.H.G.S.X.
0.6478.9At2g37660818343binding / catalytic/ coenzyme bindingF:coenzyme binding, binding, catalytic activity;P:defense response to bacterium;C:thylakoid, apoplast, chloroplast stroma, chloroplast;BOPFAMO.I.H.G.S.X.
0.6277.3At3g116308203352-cys peroxiredoxin, chloroplast (BAS1)Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues.O.I.H.G.S.X.
0.6176.7At3g47650823919bundle-sheath defective protein 2 family / bsd2 familyF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;POBO.I.H.G.S.X.
0.5570.6At1g32550840149ferredoxin family proteinF:electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding;P:electron transport chain;C:unknown;BOPAMVFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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