Co-expression analysis

Gene ID	Contig5300_at
Gene name
Homology with Arabidopsis	Similar to At2g25970: KH domain-containing protein (HF=3e-1)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.92	Contig5300_at	Contig5300	-	-	3e-1	At2g25970	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig4086_at	Contig4086	-	-	6e+0	At3g25716	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig6147_at	Contig6147	-	-	3e-13	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	Contig413_s_at	Contig413	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	HU08P15u_s_at	HU08P15u	-	-	3e+0	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig5407_at	Contig5407	-	-	1e+0	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	99.5	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.0	93.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.8	93.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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