Co-expression analysis

Gene ID	Contig5297_at
Gene name
Homology with Arabidopsis	Similar to At1g64550: ATGCN3 (HF=4e-16)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1618309_at, orthologous to the query gene, Contig5297_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	1618309_at	At1g64550	AP1-like protein	-	6e+0	At2g02050	NADH-ubiquinone oxidoreductase B18 subunit, putative	O.I.	H.G.	S.X.	Please select
0.75	91.3	1620183_at	At1g64550	-	-	2e+1	At5g28288	-	O.I.	H.G.	S.X.	Please select
0.73	90.8	1622207_at	At1g64550	-	-	7e-10	At1g49700	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1612281_at	At1g64550	hypothetical protein LOC100260786	-	8e-13	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1619949_at	At1g64550	hypothetical protein LOC100263973	-	5e-1	At3g04770	RPSAb (40S ribosomal protein SA B)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1622180_at	At1g64550	-	-	2e-24	At4g18040	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1614672_at	At1g64550	-	-	3e-1	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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