CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5297_at

Gene name
Homology with Arabidopsis Similar to At1g64550: ATGCN3 (HF=4e-16)

Module size 6 genes

NF 0.80

%ile 96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.97 Contig5297_at Contig5297 - - 4e-16 At1g64550 ATGCN3 O.I. H.G. S.X.
0.91 98.1 0.97 Contig4175_at Contig4175 - - 1e-19 At3g07100 protein transport protein Sec24, putative O.I. H.G. S.X.
0.80 92.5 0.97 Contig4760_s_at Contig4760 - - 1e+0 At4g38700 disease resistance-responsive family protein O.I. H.G. S.X.
0.71 87.1 0.97 Contig11464_at Contig11464 - - 6e-20 At1g55740 AtSIP1 (Arabidopsis thaliana seed imbibition 1) O.I. H.G. S.X.
0.67 84.7 0.97 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein O.I. H.G. S.X.
0.61 78.7 0.97 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.2 98.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.9 98.3 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.2 96.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.2 96.3 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.0 96.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6892.1.S1_at, orthologous to the query gene, Contig5297_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 Ptp.6892.1.S1_at At1g64550 ABC transporter family protein - 2e-108 At1g64550 ATGCN3 O.I. H.G. S.X.
0.77 94.9 PtpAffx.16341.1.A1_at At1g64550 - - 3e+0 At5g03920 unknown protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.37317.1.A1_a_at At1g64550 hypothetical protein - 2e-30 At5g07120 SNX2b (SORTING NEXIN 2b) O.I. H.G. S.X.
0.55 82.2 PtpAffx.2877.1.S1_at At1g64550 hypothetical protein - 4e-31 At3g15880 protein binding O.I. H.G. S.X.
0.46 73.7 PtpAffx.37317.2.A1_a_at At1g64550 hypothetical protein - 2e-19 At5g07120 SNX2b (SORTING NEXIN 2b) O.I. H.G. S.X.
0.46 73.7 PtpAffx.84152.1.A1_s_at At1g64550 hypothetical protein - 1e-22 At1g71350 eukaryotic translation initiation factor SUI1 family protein O.I. H.G. S.X.
0.44 71.9 PtpAffx.35315.1.S1_at At1g64550 hypothetical protein - 1e+0 At5g54850 unknown protein O.I. H.G. S.X.
0.36 61.6 Ptp.7904.1.S1_at At1g64550 hypothetical protein - 8e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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