Co-expression analysis

Gene ID	Contig5297_at
Gene name
Homology with Arabidopsis	Similar to At1g64550: ATGCN3 (HF=4e-16)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.97	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4290.1.S1_at, orthologous to the query gene, Contig5297_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	Gma.4290.1.S1_at	At1g64550	ABC transporter-like protein	-	2e-101	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.1623.1.S1_at	At1g64550	-	-	3e-50	At2g20580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.13041.1.S1_at	At1g64550	-	-	2e-1	At1g02440	ATARFD1A (ADP-ribosylation factor D1A)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.4208.2.S1_x_at	At1g64550	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.16767.1.S1_at	At1g64550	-	-	6e-42	At1g14610	TWN2 (TWIN 2)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.2405.1.S1_at	At1g64550	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.10782.1.S1_s_at	At1g64550	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.51048.1.S1_s_at	At1g64550	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.8060.1.S1_at	At1g64550	-	-	1e-10	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.2819.1.S1_at	At1g64550	-	-	5e-33	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.10782.1.S1_x_at	At1g64550	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.11133.1.S1_s_at	At1g64550	-	-	2e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.5762.1.S1_at	At1g64550	aminoalcoholphosphotransferase	-	2e-47	At1g13560	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.11219.1.S1_s_at	At1g64550	-	-	1e-16	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.2708.1.S1_at	At1g64550	-	-	1e-82	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.8035.1.S1_at	At1g64550	-	-	1e+0	At1g27650	ATU2AF35A	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.2136.3.S1_at	At1g64550	-	-	4e-156	At3g05530	RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.8293.1.S1_at	At1g64550	-	-	5e-70	At3g54540	ATGCN4	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.954.1.S1_at	At1g64550	-	-	7e-3	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.11225.1.S1_s_at	At1g64550	-	-	1e-97	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.11256.1.S1_at	At1g64550	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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