CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5293_at

Gene name
Homology with Arabidopsis Similar to At4g39220: ATRER1A (HF=2e-25)

Module size 17 genes

NF 0.45

%ile 62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 80.9 0.95 Contig5293_at Contig5293 - - 2e-25 At4g39220 ATRER1A O.I. H.G. S.X.
0.69 85.5 0.96 Contig7590_at Contig7590 - - 7e-1 At1g55580 LAS (Lateral Suppressor) O.I. H.G. S.X.
0.60 77.3 0.96 Contig13161_at Contig13161 - - 8e-1 At5g51760 AHG1 (ABA-hypersensitive germination 1) O.I. H.G. S.X.
0.58 74.9 0.96 Contig7592_at Contig7592 - - 5e-1 At1g54217 Expressed protein O.I. H.G. S.X.
0.54 70.3 0.95 Contig7916_at Contig7916 - - 5e-1 At2g21100 disease resistance-responsive protein-related / dirigent protein-related O.I. H.G. S.X.
0.52 68.3 0.96 Contig10686_at Contig10686 - - 4e-8 At4g24180 - O.I. H.G. S.X.
0.50 66.9 0.96 Contig8882_at Contig8882 - - 4e-2 At3g59680 unknown protein O.I. H.G. S.X.
0.48 63.2 0.96 Contig17229_at Contig17229 - - 1e+1 At2g28570 unknown protein O.I. H.G. S.X.
0.44 58.9 0.96 Contig22918_at Contig22918 - - 3e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) O.I. H.G. S.X.
0.44 58.9 0.96 Contig17213_at Contig17213 - - 1e+0 At2g44110 MLO15 (MILDEW RESISTANCE LOCUS O 15) O.I. H.G. S.X.
0.43 56.4 0.96 Contig5234_at Contig5234 - - 5e-11 At1g09140 SF2/ASF-like splicing modulator (SRP30) O.I. H.G. S.X.
0.36 47.1 0.95 Contig4185_at Contig4185 - - 5e-2 At2g39050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.35 45.1 0.95 Contig24555_at Contig24555 - - 1e+0 At2g45070 SEC61 BETA O.I. H.G. S.X.
0.35 45.1 0.96 Contig8176_at Contig8176 - - 8e-32 At1g05350 thiF family protein O.I. H.G. S.X.
0.33 42.6 0.96 Contig5187_at Contig5187 - - 3e-9 At5g08420 RNA binding O.I. H.G. S.X.
0.27 32.1 0.96 Contig5466_s_at Contig5466 - - 3e-4 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.27 32.1 0.95 Contig13733_at Contig13733 - - 2e-3 At5g35580 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 98.1 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
6.0 97.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.7 96.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5 96.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.1 94.1 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9 93.4 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.7 92.7 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.5 91.9 GSM310865 lina_without_aphids_1 GSE12584 Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage