Co-expression analysis

Gene ID Contig5260_s_at
Gene name
Homology with ArabidopsisSimilar to At2g29630: THIC (ThiaminC) (HF=0)
Module size 6 genes
NF 0.76
%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig5260_s_atContig5260--0At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.8394.00.97Contig5492_atContig5492--1e-7At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.8092.50.98Contig7652_atContig7652--3e-3At3g56660BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)O.I.H.G.S.X.
0.7187.10.98Contig20916_atContig20916--3e-1At5g66160JR700O.I.H.G.S.X.
0.6784.70.98Contig3018_atContig3018--2e+0At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.4863.20.97Contig5241_atContig5241--8e-2At5g08790ATAF2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.599.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.899.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.799.2GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.499.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM71139OWB-D stress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
4.096.0GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1612311_at, orthologous to the query gene, Contig5260_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8895.41612311_atAt2g29630hypothetical protein LOC100250096-1e-47At2g29630THIC (ThiaminC)O.I.H.G.S.X.
0.9095.61614175_atAt2g29630hypothetical protein LOC100265774-3e-33At5g54770THI1O.I.H.G.S.X.
0.9095.61620841_atAt2g29630hypothetical protein LOC100260546-1e-1At3g18470unknown proteinO.I.H.G.S.X.
0.7792.31620880_atAt2g29630hypothetical protein LOC100267434-3e-1At3g15110unknown proteinO.I.H.G.S.X.
0.6988.31622135_atAt2g29630--4e+0At4g27840-O.I.H.G.S.X.
0.6888.01611746_atAt2g29630hypothetical protein LOC100266405-1e-1At4g02080ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)O.I.H.G.S.X.
0.6384.31619329_atAt2g29630hypothetical protein LOC100248112-1e-21At5g16140peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.5879.81608018_atAt2g29630hypothetical protein LOC100253421-9e-6At1g23400CAF2O.I.H.G.S.X.
0.5679.41609122_atAt2g29630hypothetical protein LOC100267142-7e-27At2g04530CPZO.I.H.G.S.X.
0.5679.41620470_atAt2g29630hypothetical protein LOC100245759-8e-7At3g17860JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)O.I.H.G.S.X.
0.5577.31606604_atAt2g29630hypothetical protein LOC100241081-2e-6At2g39670radical SAM domain-containing proteinO.I.H.G.S.X.
0.5577.31608853_atAt2g29630similar to chloroplast post-illumination chlorophyll fluorescence increase protein-4e-39At3g15840PIFI (post-illumination chlorophyll fluorescence increase)O.I.H.G.S.X.
0.5577.31615189_atAt2g29630hypothetical protein LOC100259096-1e-1At5g19680leucine-rich repeat family proteinO.I.H.G.S.X.
0.5173.21611669_atAt2g29630hypothetical protein LOC100260088-4e-6At3g07880Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.5173.21621293_atAt2g29630hypothetical protein LOC100265613-8e-22At4g26370antitermination NusB domain-containing proteinO.I.H.G.S.X.
0.4767.71611866_atAt2g29630hypothetical protein LOC100246501-6e-12At3g53460CP29O.I.H.G.S.X.
0.4767.71616203_atAt2g29630hypothetical protein LOC100248931-1e+0At1g76940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4666.51614149_atAt2g29630hypothetical protein LOC100264613-2e-63At2g01320ABC transporter family proteinO.I.H.G.S.X.
0.3853.61607464_atAt2g29630hypothetical protein LOC100253507-3e-30At5g35220EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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