Co-expression analysis

Gene ID	Contig5260_s_at
Gene name
Homology with Arabidopsis	Similar to At2g29630: THIC (ThiaminC) (HF=0)
Module size	6 genes
NF	0.76
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig5260_s_at	Contig5260	-	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig7652_at	Contig7652	-	-	3e-3	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	Contig20916_at	Contig20916	-	-	3e-1	At5g66160	JR700	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3018_at	Contig3018	-	-	2e+0	At4g14630	GLP9 (GERMIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.97	Contig5241_at	Contig5241	-	-	8e-2	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.8	99.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.7	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.4	99.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4820.1.S1_x_at, orthologous to the query gene, Contig5260_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	Ptp.4820.1.S1_x_at	At2g29630	hypothetical protein	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	Ptp.4820.1.S1_at	At2g29630	hypothetical protein	-	0	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.29280.1.A1_at	At2g29630	hypothetical protein	-	1e-47	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.200366.1.S1_at	At2g29630	hypothetical protein	-	1e-14	At1g64430	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.100195.2.S1_s_at	At2g29630	hypothetical protein	-	2e-127	At2g29630	THIC (ThiaminC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.205262.1.S1_s_at	At2g29630	-	-	2e-1	At1g74520	ATHVA22A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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