Co-expression analysis

Gene ID Contig5228_s_at
Gene name
Homology with ArabidopsisSimilar to At1g10210: ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) (HF=2e-17)
Module size 8 genes
NF 0.41
%ile 56.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.96Contig5228_s_atContig5228--2e-17At1g10210ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)O.I.H.G.S.X.
0.7187.10.96rbah36l17_s_atrbah36l17--7e-30At1g30580GTP bindingO.I.H.G.S.X.
0.6784.70.96Contig5361_atContig5361--3e+0At4g29103unknown proteinO.I.H.G.S.X.
0.4053.10.97Contig6751_atContig6751--1e+0At3g04990-O.I.H.G.S.X.
0.3342.60.97Contig5893_atContig5893--1e-52At1g04170EIF2 GAMMAO.I.H.G.S.X.
0.3138.60.97Contig3967_atContig3967--6e-16At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.
0.2732.10.96Contig326_x_atContig326--0At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.2630.40.96Contig14012_atContig14012--7e-1At4g23920UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.498.1GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.496.6GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.394.6GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.194.1GSM440973Stressed awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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