Co-expression analysis

Gene ID	Contig5187_at
Gene name
Homology with Arabidopsis	Similar to At5g08420: RNA binding (HF=3e-9)
Module size	7 genes
NF	0.51
%ile	70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	56.4	0.96	Contig5187_at	Contig5187	-	-	3e-9	At5g08420	RNA binding	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig12243_at	Contig12243	-	-	2e+0	At4g02370	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4	99.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.4	98.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.6	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.5	96.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.5	96.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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