Co-expression analysis

Gene ID Contig5149_at
Gene name
Homology with ArabidopsisSimilar to At1g66670: CLPP3 (HF=4e-2)
Module size 6 genes
NF 0.78
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.90Contig5149_atContig5149--4e-2At1g66670CLPP3O.I.H.G.S.X.
0.8394.00.93Contig6254_atContig6254--3e+0At2g37950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.8394.00.93Contig11168_atContig11168--1e-15At5g12480CPK7 (calmodulin-domain protein kinase 7)O.I.H.G.S.X.
0.8092.50.93Contig11519_atContig11519--2e-4At1g66680AR401O.I.H.G.S.X.
0.7187.10.90Contig15950_atContig15950--1e+0At1g15220CCMHO.I.H.G.S.X.
0.5774.90.92Contig11041_atContig11041--1e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.899.8GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
22.399.8GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.497.5GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.497.5GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.795.5GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.394.6GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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