Co-expression analysis

Gene ID Contig5146_at
Gene name
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=4e-21)
Module size 6 genes
NF 0.40
%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.87Contig5146_atContig5146--4e-21At1g76690OPR2O.I.H.G.S.X.
0.6178.70.89Contig16253_atContig16253--7e+0At5g48515-O.I.H.G.S.X.
0.5369.70.87Contig3836_atContig3836--9e-3At1g27540F-box family proteinO.I.H.G.S.X.
0.2935.50.87Contig16249_atContig16249--6e-4At3g61320unknown proteinO.I.H.G.S.X.
0.2224.20.89Contig10972_atContig10972--1e-5At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.1919.60.89rbah44m04_s_atrbah44m04--2e+0At1g32560late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6380.30.79rbah11m03_atrbah11m03--3e-1At4g31320auxin-responsive protein, putative / small auxin up RNA (SAUR_C)O.I.H.G.S.X.
0.5572.00.76Contig11173_s_atContig11173--1e+0At5g60800heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4863.20.75Contig21256_atContig21256--7e-2At1g08630THA1 (Threonine Aldolase 1)O.I.H.G.S.X.
0.4053.10.82Contig21103_atContig21103--1e+0At3g07880Rho GDP-dissociation inhibitor family proteinO.I.H.G.S.X.
0.3647.10.84Contig7294_atContig7294--2e-13At4g15130catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseO.I.H.G.S.X.
0.3647.10.87Contig9009_s_atContig9009--4e-1At3g10116unknown proteinO.I.H.G.S.X.
0.3647.10.90Contig11287_s_atContig11287--1e+0At5g15960KIN1O.I.H.G.S.X.
0.3342.60.83Contig17086_atContig17086--6e+0At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.3342.60.87HVSMEb0001K06r2_atHVSMEb0001K06r2--8e-1At5g58210hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3240.30.76Contig19608_atContig19608--8e-1At5g16050GRF5 (GENERAL REGULATORY FACTOR 5)O.I.H.G.S.X.
0.3240.30.77Contig6983_atContig6983--6e-1At5g22370QQT1 (QUATRE-QUART 1)O.I.H.G.S.X.
0.3240.30.91Contig20219_atContig20219--1e-2At3g24770CLE41 (CLAVATA3/ESR-RELATED 41)O.I.H.G.S.X.
0.3138.60.89Contig8340_atContig8340--8e-3At2g41190amino acid transporter family proteinO.I.H.G.S.X.
0.2935.50.87Contig17628_atContig17628--8e-1At1g05960bindingO.I.H.G.S.X.
0.2630.40.71EBem09_SQ001_F20_s_atEBem09_SQ001_F20--1e+1At5g57560TCH4 (Touch 4)O.I.H.G.S.X.
0.2528.90.86Contig3986_s_atContig3986--6e-2At4g13450universal stress protein (USP) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.999.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.399.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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