Co-expression analysis

Gene ID	Contig5146_at
Gene name
Homology with Arabidopsis	Similar to At1g76690: OPR2 (HF=4e-21)
Module size	6 genes
NF	0.40
%ile	55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.87	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.89	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig3836_at	Contig3836	-	-	9e-3	At1g27540	F-box family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.87	Contig16249_at	Contig16249	-	-	6e-4	At3g61320	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.89	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.89	rbah44m04_s_at	rbah44m04	-	-	2e+0	At1g32560	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
35.9	99.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
17.3	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.5	91.9	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5509.1.S1_at, orthologous to the query gene, Contig5146_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.1	Ta.5509.1.S1_at	At1g76690	-	-	1e-17	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.4059.1.S1_a_at	At1g76690	-	-	6e-42	At3g09550	protein binding	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.19824.2.S1_s_at	At1g76690	-	-	1e-9	At4g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.17098.1.S1_at	At1g76690	-	-	3e-2	At2g45410	LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.11699.1.A1_at	At1g76690	-	-	4e+0	At3g20370	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.110862.1.S1_s_at	At1g76690	-	-	7e-1	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.108337.1.S1_s_at	At1g76690	-	-	9e-13	At2g30650	catalytic	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.10740.1.S1_x_at	At1g76690	-	-	8e+0	At3g60770	40S ribosomal protein S13 (RPS13A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.13260.1.A1_at	At1g76690	-	-	4e-4	At5g62960	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.50947.1.S1_at	At1g76690	-	-	2e-5	At1g71020	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.100035.1.S1_at	At1g76690	-	-	9e-6	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.5500.2.S1_x_at	At1g76690	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.11560.3.S1_at	At1g76690	-	-	2e-5	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.3420.2.S1_at	At1g76690	-	-	7e-8	At1g06310	ACX6 (ACYL-COA OXIDASE 6)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.5500.2.S1_a_at	At1g76690	-	-	4e+0	At3g53870	40S ribosomal protein S3 (RPS3B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.22677.1.S1_at	At1g76690	Leucine-rich repeat protein	-	2e-4	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.6039.2.S1_at	At1g76690	-	-	2e-8	At4g30490	AFG1-like ATPase family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.4273.1.S1_at	At1g76690	-	-	1e-4	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.113489.1.S1_at	At1g76690	-	-	5e-10	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6750.3.S1_at	At1g76690	-	-	1e-23	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.11338.3.S1_a_at	At1g76690	-	-	4e+0	At3g47200	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.2187.1.S1_at	At1g76690	-	-	4e-2	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.5228.2.A1_a_at	At1g76690	-	-	2e+1	At5g38050	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.11338.1.S1_at	At1g76690	-	-	3e+0	At4g08593	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.6327.1.S1_at	At1g76690	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.119956.1.A1_at	At1g76690	-	-	2e+1	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.27228.1.S1_at	At1g76690	-	-	5e-2	At2g15390	FUT4	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6327.3.S1_a_at	At1g76690	-	-	1e+0	At3g01440	oxygen evolving enhancer 3 (PsbQ) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.9437.2.S1_a_at	At1g76690	-	-	6e-2	At5g43100	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.22534.1.S1_a_at	At1g76690	-	-	6e-3	At1g50740	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.28879.2.S1_x_at	At1g76690	-	-	3e-3	At1g34750	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7147.2.S1_at	At1g76690	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.7449.1.S1_at	At1g76690	-	-	2e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.28879.1.S1_a_at	At1g76690	-	-	5e-8	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.19	22.4	Ta.7474.2.S1_a_at	At1g76690	-	-	5e-9	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.1366.1.S1_at	At1g76690	-	-	3e-6	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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