Co-expression analysis

Gene ID Contig5146_at
Gene name
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=4e-21)
Module size 6 genes
NF 0.40
%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.87Contig5146_atContig5146--4e-21At1g76690OPR2O.I.H.G.S.X.
0.6178.70.89Contig16253_atContig16253--7e+0At5g48515-O.I.H.G.S.X.
0.5369.70.87Contig3836_atContig3836--9e-3At1g27540F-box family proteinO.I.H.G.S.X.
0.2935.50.87Contig16249_atContig16249--6e-4At3g61320unknown proteinO.I.H.G.S.X.
0.2224.20.89Contig10972_atContig10972--1e-5At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.1919.60.89rbah44m04_s_atrbah44m04--2e+0At1g32560late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.999.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.399.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5509.1.S1_at, orthologous to the query gene, Contig5146_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.1Ta.5509.1.S1_atAt1g76690--1e-17At1g76690OPR2O.I.H.G.S.X.
0.5678.6Ta.4059.1.S1_a_atAt1g76690--6e-42At3g09550protein bindingO.I.H.G.S.X.
0.5273.7TaAffx.19824.2.S1_s_atAt1g76690--1e-9At4g27020unknown proteinO.I.H.G.S.X.
0.5273.7TaAffx.17098.1.S1_atAt1g76690--3e-2At2g45410LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19)O.I.H.G.S.X.
0.5173.0Ta.11699.1.A1_atAt1g76690--4e+0At3g20370meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.4869.0TaAffx.110862.1.S1_s_atAt1g76690--7e-1At2g38695unknown proteinO.I.H.G.S.X.
0.4767.9TaAffx.108337.1.S1_s_atAt1g76690--9e-13At2g30650catalyticO.I.H.G.S.X.
0.4666.8Ta.10740.1.S1_x_atAt1g76690--8e+0At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.4666.8Ta.13260.1.A1_atAt1g76690--4e-4At5g62960unknown proteinO.I.H.G.S.X.
0.4565.2TaAffx.50947.1.S1_atAt1g76690--2e-5At1g71020armadillo/beta-catenin repeat family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.4260.9TaAffx.100035.1.S1_atAt1g76690--9e-6At5g50210QS (QUINOLINATE SYNTHASE)O.I.H.G.S.X.
0.4058.4Ta.5500.2.S1_x_atAt1g76690--4e+0At3g5387040S ribosomal protein S3 (RPS3B)O.I.H.G.S.X.
0.4058.4Ta.11560.3.S1_atAt1g76690--2e-5At4g31410unknown proteinO.I.H.G.S.X.
0.3956.1Ta.3420.2.S1_atAt1g76690--7e-8At1g06310ACX6 (ACYL-COA OXIDASE 6)O.I.H.G.S.X.
0.3956.1Ta.5500.2.S1_a_atAt1g76690--4e+0At3g5387040S ribosomal protein S3 (RPS3B)O.I.H.G.S.X.
0.3854.7Ta.22677.1.S1_atAt1g76690Leucine-rich repeat protein-2e-4At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.3753.0Ta.6039.2.S1_atAt1g76690--2e-8At4g30490AFG1-like ATPase family proteinO.I.H.G.S.X.
0.3753.0Ta.4273.1.S1_atAt1g76690--1e-4At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.3651.9TaAffx.113489.1.S1_atAt1g76690--5e-10At3g12800SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)O.I.H.G.S.X.
0.3651.9Ta.6750.3.S1_atAt1g76690--1e-23At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)O.I.H.G.S.X.
0.3549.8Ta.11338.3.S1_a_atAt1g76690--4e+0At3g47200unknown proteinO.I.H.G.S.X.
0.3549.8TaAffx.2187.1.S1_atAt1g76690--4e-2At3g47300SELT (SELT-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.3448.1Ta.5228.2.A1_a_atAt1g76690--2e+1At5g38050unknown proteinO.I.H.G.S.X.
0.3346.9Ta.11338.1.S1_atAt1g76690--3e+0At4g08593unknown proteinO.I.H.G.S.X.
0.3346.9Ta.6327.1.S1_atAt1g76690--1e-2At5g61530small G protein family protein / RhoGAP family proteinO.I.H.G.S.X.
0.3346.9TaAffx.119956.1.A1_atAt1g76690--2e+1At5g63510GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)O.I.H.G.S.X.
0.3142.7Ta.27228.1.S1_atAt1g76690--5e-2At2g15390FUT4O.I.H.G.S.X.
0.3142.7Ta.6327.3.S1_a_atAt1g76690--1e+0At3g01440oxygen evolving enhancer 3 (PsbQ) family proteinO.I.H.G.S.X.
0.3142.7Ta.9437.2.S1_a_atAt1g76690--6e-2At5g43100aspartyl protease family proteinO.I.H.G.S.X.
0.2839.2Ta.22534.1.S1_a_atAt1g76690--6e-3At1g50740unknown proteinO.I.H.G.S.X.
0.2532.1Ta.28879.2.S1_x_atAt1g76690--3e-3At1g34750protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2430.3Ta.7147.2.S1_atAt1g76690--9e-9At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.2430.3Ta.7449.1.S1_atAt1g76690--2e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.2024.0Ta.28879.1.S1_a_atAt1g76690--5e-8At1g22280protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.1922.4Ta.7474.2.S1_a_atAt1g76690--5e-9At2g39770CYT1 (CYTOKINESIS DEFECTIVE 1)O.I.H.G.S.X.
0.1618.2Ta.1366.1.S1_atAt1g76690--3e-6At4g16210ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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