Co-expression analysis

Gene ID Contig5146_at
Gene name
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=4e-21)
Module size 6 genes
NF 0.40
%ile 55.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.50.87Contig5146_atContig5146--4e-21At1g76690OPR2O.I.H.G.S.X.
0.6178.70.89Contig16253_atContig16253--7e+0At5g48515-O.I.H.G.S.X.
0.5369.70.87Contig3836_atContig3836--9e-3At1g27540F-box family proteinO.I.H.G.S.X.
0.2935.50.87Contig16249_atContig16249--6e-4At3g61320unknown proteinO.I.H.G.S.X.
0.2224.20.89Contig10972_atContig10972--1e-5At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.1919.60.89rbah44m04_s_atrbah44m04--2e+0At1g32560late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.999.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
17.399.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.591.9GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.390.9GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM372992genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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