Co-expression analysis

Gene ID	Contig5106_at
Gene name
Homology with Arabidopsis	Similar to At5g66650: unknown protein (HF=3e-8)
Module size	15 genes
NF	0.52
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	70.3	0.92	Contig5106_at	Contig5106	-	-	3e-8	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	rbasd23b03_s_at	rbasd23b03	-	-	8e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.92	Contig24006_at	Contig24006	-	-	4e+0	At4g13150	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.94	Contig5805_at	Contig5805	-	-	3e-2	At4g20280	TAF11 (TBP-ASSOCIATED FACTOR 11)	O.I.	H.G.	S.X.	Please select
0.58	74.9	0.94	Contig1269_at	Contig1269	-	-	2e-84	At3g17390	MTO3 (METHIONINE OVER-ACCUMULATOR 3)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig4140_s_at	Contig4140	-	-	2e-7	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig10312_at	Contig10312	-	-	4e-1	At4g36130	60S ribosomal protein L8 (RPL8C)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig11093_at	Contig11093	-	-	3e-21	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.94	Contig25358_at	Contig25358	-	-	2e+0	At1g60850	ATRPAC42	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig12597_at	Contig12597	-	-	2e-1	At1g50680	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.93	Contig33_at	Contig33	-	-	6e+0	At4g04780	MED21 (MEDIATOR 21)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	rbasd3a10_s_at	rbasd3a10	-	-	1e-6	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig7526_at	Contig7526	-	-	8e-12	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig651_at	Contig651	-	-	2e-20	At4g31990	ASP5 (ASPARTATE AMINOTRANSFERASE 5)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig5804_at	Contig5804	-	-	2e-22	At5g23120	HCF136	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.3	94.6	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.2	94.3	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.1	94.1	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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