Co-expression analysis

Gene ID	Contig5032_at
Gene name
Homology with Arabidopsis	Similar to At4g38210: ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) (HF=4e-1)
Module size	6 genes
NF	0.68
%ile	89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.91	Contig5032_at	Contig5032	-	-	4e-1	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	Contig2425_s_at	Contig2425	-	-	2e+0	At5g06900	CYP93D1	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.91	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig25583_at	Contig25583	-	-	2e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.91	HVSMEl0003A05r2_at	HVSMEl0003A05r2	-	-	1e+0	At3g59320	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.92	Contig8372_at	Contig8372	-	-	1e+0	At3g27960	kinesin light chain-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.1	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.4	94.8	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage