Co-expression analysis

Gene ID	Contig5029_at
Gene name
Homology with Arabidopsis	Similar to At2g35120: glycine cleavage system H protein, mitochondrial, putative (HF=1e-4)
Module size	7 genes
NF	0.56
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.81	Contig5029_at	Contig5029	-	-	1e-4	At2g35120	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.84	Contig6868_at	Contig6868	-	-	2e-6	At4g29400	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	HVSMEm0011N10r2_at	HVSMEm0011N10r2	-	-	4e+0	At3g58877	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.85	Contig13824_at	Contig13824	-	-	4e-1	At5g46770	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.85	Contig6868_s_at	Contig6868	-	-	2e-6	At4g29400	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig17140_at	Contig17140	-	-	5e+0	At2g23670	YCF37 (Arabidopsis homolog of Synechocystis YCF37)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.84	Contig11031_at	Contig11031	-	-	3e-3	At5g67470	formin homology 2 domain-containing protein / FH2 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.5	99.6	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.5	99.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.8	99.2	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.2	99.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.8	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.9	97.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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