CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig5001_s_at

Gene name
Homology with Arabidopsis Similar to At5g09440: EXL4 (EXORDIUM LIKE 4) (HF=3e-1)

Module size 8 genes

NF 0.78

%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 68.3 0.72 Contig5001_s_at Contig5001 - - 3e-1 At5g09440 EXL4 (EXORDIUM LIKE 4) O.I. H.G. S.X.
0.93 98.7 0.74 Contig12402_at Contig12402 - - 3e+0 At3g05490 RALFL22 (ralf-like 22) O.I. H.G. S.X.
0.93 98.7 0.77 HVSMEg0001N20r2_at HVSMEg0001N20r2 - - 3e+0 At4g03050 AOP3 O.I. H.G. S.X.
0.86 94.8 0.77 Contig2041_x_at Contig2041 - - 1e+0 At3g61310 DNA-binding family protein O.I. H.G. S.X.
0.71 87.1 0.81 Contig6006_s_at Contig6006 - - 3e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative O.I. H.G. S.X.
0.70 86.0 0.74 Contig2041_at Contig2041 - - 1e+0 At3g61310 DNA-binding family protein O.I. H.G. S.X.
0.67 84.7 0.77 Contig8898_at Contig8898 - - 2e-29 At2g25570 binding O.I. H.G. S.X.
0.67 84.7 0.80 Contig6005_x_at Contig6005 - - 3e-1 At1g20130 hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.0 99.3 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
6.8 98.3 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
6.2 98.0 GSM68903 27 h control replicate3 GSE3097 Barley1 salinity stress study
6.0 97.9 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3 97.4 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.1 97.3 GSM68898 8 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
5.1 97.3 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the rice gene, Os11g0113300, orthologous to the query gene, Contig5001_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os11g0113300 At5g09440 - Conserved hypothetical protein 5e-1 At4g20470 unknown protein O.I. H.G. S.X.
0.50 68.0 Os09g0490200 At5g09440 - EIL3 1e-12 At1g73730 EIL3 (ETHYLENE-INSENSITIVE3-LIKE3) O.I. H.G. S.X.
0.50 68.0 Os03g0318600 At5g09440 - Transcription factor HBP-1b(c38) 4e-15 At5g06950 AHBP-1B O.I. H.G. S.X.
0.46 60.9 Os06g0102700 At5g09440 - Arm repeat-containing protein 1e-6 At3g46510 PUB13 (PLANT U-BOX 13) O.I. H.G. S.X.
0.29 31.1 Os01g0780500 At5g09440 - SCAMP family protein 1e-14 At2g20840 secretory carrier membrane protein (SCAMP) family protein O.I. H.G. S.X.
0.27 27.5 Os06g0714200 At5g09440 - Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein 8e-19 At2g46700 calcium-dependent protein kinase, putative / CDPK, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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