Co-expression analysis

Gene ID Contig5001_s_at
Gene name
Homology with ArabidopsisSimilar to At5g09440: EXL4 (EXORDIUM LIKE 4) (HF=3e-1)
Module size 8 genes
NF 0.78
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5268.30.72Contig5001_s_atContig5001--3e-1At5g09440EXL4 (EXORDIUM LIKE 4)O.I.H.G.S.X.
0.9398.70.74Contig12402_atContig12402--3e+0At3g05490RALFL22 (ralf-like 22)O.I.H.G.S.X.
0.9398.70.77HVSMEg0001N20r2_atHVSMEg0001N20r2--3e+0At4g03050AOP3O.I.H.G.S.X.
0.8694.80.77Contig2041_x_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.7187.10.81Contig6006_s_atContig6006--3e+0At1g60830U2 snRNP auxiliary factor large subunit, putativeO.I.H.G.S.X.
0.7086.00.74Contig2041_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.6784.70.77Contig8898_atContig8898--2e-29At2g25570bindingO.I.H.G.S.X.
0.6784.70.80Contig6005_x_atContig6005--3e-1At1g20130hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.3GSM688933 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
6.898.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
6.298.0GSM6890327 h control replicate3GSE3097Barley1 salinity stress studyLink to GEO
6.097.9GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.397.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.197.3GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
5.197.3GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C24000081_at, orthologous to the query gene, Contig5001_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6PsAffx.C24000081_atAt5g09440--5e-1At4g29810ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)O.I.H.G.S.X.
0.5071.7PsAffx.C22000090_atAt5g09440--3e-2At5g55690MADS-box protein (AGL47)O.I.H.G.S.X.
0.3853.3PsAffx.C61000020_atAt5g09440--9e-1At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2939.0PsAffx.CL1570Contig1_atAt5g09440--5e-1At3g2483060S ribosomal protein L13A (RPL13aB)O.I.H.G.S.X.
0.2532.6GmaAffx.85491.1.S1_s_atAt5g09440--1e+1At5g26692-O.I.H.G.S.X.
0.001.4Gma.7789.2.S1_atAt5g09440--1e-101At4g02890UBQ14O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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