Co-expression analysis

Gene ID	Contig4976_at
Gene name
Homology with Arabidopsis	Similar to At5g12010: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.49
%ile	69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.82	Contig4976_at	Contig4976	-	-	4e+0	At5g12010	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.83	Contig10245_at	Contig10245	-	-	2e+0	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.83	Contig12158_at	Contig12158	-	-	1e-1	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.83	Contig9728_at	Contig9728	-	-	4e-1	At1g58100	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.83	EBpi07_SQ002_O14_at	EBpi07_SQ002_O14	-	-	3e+0	At2g26520	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.84	Contig2737_at	Contig2737	-	-	9e-1	At4g22100	BGLU3 (BETA GLUCOSIDASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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