Co-expression analysis

Gene ID	Contig4949_at
Gene name
Homology with Arabidopsis	Similar to At5g13000: ATGSL12 (glucan synthase-like 12) (HF=3e-53)
Module size	6 genes
NF	0.36
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.97	Contig4949_at	Contig4949	-	-	3e-53	At5g13000	ATGSL12 (glucan synthase-like 12)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig25838_at	Contig25838	-	-	2e-17	At3g24180	catalytic/ glucosylceramidase	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig8166_at	Contig8166	-	-	4e-11	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig6981_at	Contig6981	-	-	4e-5	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	HM02P13u_s_at	HM02P13u	-	-	6e+0	At5g47980	transferase family protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.96	HX03D08u_s_at	HX03D08u	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	97.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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