Co-expression analysis

Gene ID Contig4931_at
Gene name
Homology with ArabidopsisSimilar to At1g75850: VPS35B (VPS35 HOMOLOG B) (HF=1e-22)
Module size 7 genes
NF 0.38
%ile 52.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.83Contig4931_atContig4931--1e-22At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.7187.10.83HY07D14u_s_atHY07D14u--3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.5066.90.87HVSMEf0003F23r2_atHVSMEf0003F23r2--9e-1At5g09570-O.I.H.G.S.X.
0.4053.10.88Contig9481_atContig9481--2e+0At5g60830AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)O.I.H.G.S.X.
0.3240.30.87Contig12297_atContig12297--1e+0At3g13190myosin heavy chain-relatedO.I.H.G.S.X.
0.2326.10.83Contig4956_atContig4956--2e+0At5g01840OFP1 (OVATE FAMILY PROTEIN 1)O.I.H.G.S.X.
0.2122.60.83Contig19410_atContig19410--1e+1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.2GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.098.7GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.798.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
7.198.4GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.097.9GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.897.8GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.897.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.797.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.597.6GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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