Co-expression analysis

Gene ID	Contig4905_s_at
Gene name
Homology with Arabidopsis	Similar to At1g47420: - (HF=2e-3)
Module size	6 genes
NF	0.53
%ile	73.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.87	Contig4905_s_at	Contig4905	-	-	2e-3	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.87	Contig845_at	Contig845	-	-	2e+0	At1g63522	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	Contig20457_at	Contig20457	-	-	5e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig26236_at	Contig26236	-	-	1e-6	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	HV_CEb0010L04r2_x_at	HV_CEb0010L04r2	-	-	2e+1	At5g17140	cysteine proteinase-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	Contig11327_at	Contig11327	-	-	3e+1	At5g11140	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.9	93.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
2.9	93.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
2.8	93.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.6	92.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6	92.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.6	92.3	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage