Co-expression analysis

Gene ID	Contig4893_at
Gene name
Homology with Arabidopsis	Similar to At3g02780: IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2) (HF=2e-25)
Module size	10 genes
NF	0.68
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	85.5	0.97	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.97	HS05E04u_s_at	HS05E04u	-	-	4e-3	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig16573_at	Contig16573	-	-	3e-2	At3g56610	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.97	Contig3420_at	Contig3420	-	-	5e-66	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig2855_at	Contig2855	-	-	2e-3	At1g20450	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig665_s_at	Contig665	-	-	2e-20	At1g07820	histone H4	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.98	Contig6376_at	Contig6376	-	-	1e-10	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig3559_at	Contig3559	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.97	Contig19935_at	Contig19935	-	-	2e-6	At3g58000	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.4	96.6	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.4	96.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.2	96.3	GSM71141	OWB-D stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.2	96.3	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.2	96.3	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.1	96.2	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.7	95.5	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.6	95.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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