Co-expression analysis

Gene ID Contig484_x_at
Gene name
Homology with ArabidopsisSimilar to At1g09200: histone H3 (HF=1e-38)
Module size 6 genes
NF 0.17
%ile 20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.94Contig484_x_atContig484--1e-38At1g09200histone H3O.I.H.G.S.X.
0.5774.90.91Contig484_s_atContig484--1e-38At1g09200histone H3O.I.H.G.S.X.
0.1818.20.95Contig10108_atContig10108--2e-1At3g22830AT-HSFA6BO.I.H.G.S.X.
0.1514.10.94Contig15357_atContig15357--3e-1At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.1412.90.94Contig4789_atContig4789--1e-14At5g42790PAF1O.I.H.G.S.X.
0.075.80.94Contig17421_atContig17421--4e+0At1g45248-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.099.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
13.299.4GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.499.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.198.9GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.497.5GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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