Co-expression analysis

Gene ID	Contig4845_at
Gene name
Homology with Arabidopsis	Similar to At1g68140: - (HF=2e-4)
Module size	6 genes
NF	0.98
%ile	99.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig4845_at	Contig4845	-	-	2e-4	At1g68140	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.91	Contig7111_at	Contig7111	-	-	2e-37	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.92	Contig4844_s_at	Contig4844	-	-	2e+0	At4g23070	ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.94	HS08O16u_s_at	HS08O16u	-	-	2e+1	At5g62440	-	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.94	HVSMEb0004L16r2_at	HVSMEb0004L16r2	-	-	1e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.91	Contig3822_at	Contig3822	-	-	6e-43	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.2	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
10.6	99.2	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
9.6	99.0	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
9.1	98.9	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.9	98.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
8.4	98.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.9	98.7	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.8	98.6	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.7	98.6	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.3	98.5	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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