Co-expression analysis

Gene ID	Contig4817_at
Gene name
Homology with Arabidopsis	Similar to At2g01140: fructose-bisphosphate aldolase, putative (HF=2e-56)
Module size	6 genes
NF	0.84
%ile	97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig4817_at	Contig4817	-	-	2e-56	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.92	Contig4816_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.87	Contig4815_at	Contig4815	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.87	HVSMEf0019K02r2_s_at	HVSMEf0019K02r2	-	-	8e-1	At1g18030	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig4816_x_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig7032_at	Contig7032	-	-	1e-7	At5g64570	XYL4	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
51.1	99.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.6	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.4	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.6	99.8	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.0	99.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.5	98.8	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.6	98.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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