Co-expression analysis

Gene ID	Contig4816_x_at
Gene name
Homology with Arabidopsis	Similar to At1g70700: TIFY7 (HF=5e+0)
Module size	6 genes
NF	0.75
%ile	94.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.91	Contig4816_x_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.88	Contig4816_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig4817_at	Contig4817	-	-	2e-56	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.85	Contig4815_at	Contig4815	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig22458_at	Contig22458	-	-	8e-6	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig7032_at	Contig7032	-	-	1e-7	At5g64570	XYL4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
51.1	99.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.6	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.4	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.5	99.8	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.0	99.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.7	98.9	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.6	98.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the maize gene, Zm.9324.1.S1_at, orthologous to the query gene, Contig4816_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	Zm.9324.1.S1_at	At1g70700	-	-	7e+0	At5g57510	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.12295.2.S1_a_at	At1g70700	stress responsive protein	-	2e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.4119.1.S1_at	At1g70700	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.15058.1.A1_at	At1g70700	beta-propeller domains of methanol dehydrogenase type	-	6e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.10383.4.S1_a_at	At1g70700	transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.3168.1.A1_x_at	At1g70700	-	-	5e-2	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.7021.1.S1_at	At1g70700	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.17988.1.A1_at	At1g70700	-	-	6e-10	At4g26970	aconitate hydratase/ copper ion binding	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6093.2.S1_at	At1g70700	translocon-associated protein beta containing protein	-	6e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.7167.1.A1_at	At1g70700	membrane protein	-	4e-7	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.6416.1.S1_at	At1g70700	hypothetical protein LOC100277106	-	3e+0	At5g22880	HTB2	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.17213.1.A1_at	At1g70700	-	-	2e+0	At1g75520	SRS5 (SHI-RELATED SEQUENCE 5)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.687.2.S1_at	At1g70700	hypothetical protein LOC100279992	-	8e-36	At2g04030	CR88	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.5056.1.A1_at	At1g70700	-	-	6e+0	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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