Co-expression analysis

Gene ID	Contig4816_x_at
Gene name
Homology with Arabidopsis	Similar to At1g70700: TIFY7 (HF=5e+0)
Module size	6 genes
NF	0.75
%ile	94.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.91	Contig4816_x_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.88	Contig4816_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.88	Contig4817_at	Contig4817	-	-	2e-56	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.85	Contig4815_at	Contig4815	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig22458_at	Contig22458	-	-	8e-6	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig7032_at	Contig7032	-	-	1e-7	At5g64570	XYL4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
51.1	99.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.6	99.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
25.4	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.5	99.8	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
20.0	99.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.7	98.9	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.0	98.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.6	98.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.1	96.2	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.219840.1.S1_at, orthologous to the query gene, Contig4816_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	88.6	PtpAffx.219840.1.S1_at	At1g70700	hypothetical protein	-	2e+0	At5g29070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.27027.2.A1_at	At1g70700	hypothetical protein	-	9e-10	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.221423.1.S1_x_at	At1g70700	nbs-lrr resistance protein	-	1e+0	At3g05327	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.216334.1.S1_at	At1g70700	hypothetical protein	-	4e+0	At5g20740	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.207487.1.S1_at	At1g70700	hypothetical protein	-	2e+0	At2g07779	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.221417.1.S1_at	At1g70700	hypothetical protein	-	7e-1	At5g20820	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.225439.1.S1_at	At1g70700	hypothetical protein	-	5e-3	At5g07420	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.213848.1.S1_at	At1g70700	hypothetical protein	-	8e-1	At4g21780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.123118.1.A1_at	At1g70700	-	-	1e+0	At5g18362	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.210607.1.S1_s_at	At1g70700	hypothetical protein	-	3e-19	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.207198.1.S1_at	At1g70700	hypothetical protein	-	1e+0	At1g30135	JAZ8 (JASMONATE-ZIM-DOMAIN PROTEIN 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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