Co-expression analysis

Gene ID	Contig4814_at
Gene name
Homology with Arabidopsis	Similar to At3g60530: zinc finger (GATA type) family protein (HF=1e+0)
Module size	24 genes
NF	0.07
%ile	9.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.86	Contig4814_at	Contig4814	-	-	1e+0	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig11148_at	Contig11148	-	-	1e+0	At3g05800	transcription factor	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.92	Contig9504_at	Contig9504	-	-	2e-3	At2g26740	ATSEH (Arabidopsis thaliana soluble epoxide hydrolase)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.88	Contig16036_at	Contig16036	-	-	1e+0	At2g36820	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig11605_at	Contig11605	-	-	4e-8	At5g47310	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.91	HT09O01u_at	HT09O01u	-	-	3e+0	At1g21050	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig16107_at	Contig16107	-	-	2e+0	At3g09980	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.89	Contig9134_at	Contig9134	-	-	4e-22	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig21290_at	Contig21290	-	-	2e+0	At5g01910	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.92	Contig21187_at	Contig21187	-	-	1e+0	At3g52420	OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.88	Contig13023_at	Contig13023	-	-	3e+0	At3g04710	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.90	Contig20750_at	Contig20750	-	-	8e-1	At1g74448	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	Contig12359_at	Contig12359	-	-	8e-1	At4g12860	UNE14 (unfertilized embryo sac 14)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig13746_at	Contig13746	-	-	8e-10	At1g23540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig15097_at	Contig15097	-	-	3e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	HD12A09r_at	HD12A09r	-	-	3e+0	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.88	Contig6326_at	Contig6326	-	-	6e-7	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.91	HZ57D16r_at	HZ57D16r	-	-	8e-1	At5g20240	PI (PISTILLATA)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.89	Contig8484_at	Contig8484	-	-	1e-24	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	Contig21135_at	Contig21135	-	-	2e+0	At2g10340	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	HU13K14u_at	HU13K14u	-	-	4e-2	At2g30530	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	Contig322_at	Contig322	-	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.92	Contig15114_at	Contig15114	-	-	1e-1	At1g07870	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	HA10F20u_x_at	HA10F20u	-	-	4e+0	At2g42240	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.8	93.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.6	92.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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