Co-expression analysis

Gene ID Contig4811_at
Gene name
Homology with ArabidopsisSimilar to At2g45750: dehydration-responsive family protein (HF=5e-3)
Module size 6 genes
NF 0.63
%ile 84.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.85Contig4811_atContig4811--5e-3At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.8092.50.88Contig2857_atContig2857--4e-3At1g66680AR401O.I.H.G.S.X.
0.5572.00.88Contig2858_s_atContig2858--1e-3At1g66680AR401O.I.H.G.S.X.
0.5066.90.88Contig11077_atContig11077--7e+0At5g65320basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4458.90.87Contig14526_atContig14526--2e-16At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.4053.10.88Contig4810_atContig4810--2e-2At4g00750dehydration-responsive family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.198.0GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.796.9GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211498.1.S1_s_at, orthologous to the query gene, Contig4811_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5984.9PtpAffx.211498.1.S1_s_atAt2g45750hypothetical protein-1e-15At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.6086.0PtpAffx.30698.1.S1_atAt2g45750hypothetical protein-2e-3At1g73000-O.I.H.G.S.X.
0.5884.2Ptp.3084.1.S1_s_atAt2g45750hypothetical protein-3e-5At2g01660PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)O.I.H.G.S.X.
0.3559.7Ptp.6417.1.S1_s_atAt2g45750hypothetical protein-1e-1At3g54120reticulon family protein (RTNLB12)O.I.H.G.S.X.
0.2950.5PtpAffx.208425.1.S1_atAt2g45750hypothetical protein-6e-66At5g18500protein kinase family proteinO.I.H.G.S.X.
0.2747.1Ptp.2691.2.S1_atAt2g45750hypothetical protein-7e-56At5g13420transaldolase, putativeO.I.H.G.S.X.
0.2645.2Ptp.7924.1.S1_atAt2g45750--1e+0At1g32520unknown proteinO.I.H.G.S.X.
0.2136.5PtpAffx.155797.1.S1_atAt2g45750hypothetical protein-1e+0At2g28625unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.202218.1.S1_s_atAt2g45750hypothetical protein-2e-5At4g00440unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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