CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4810_at

Gene name
Homology with Arabidopsis Similar to At4g00750: dehydration-responsive family protein (HF=2e-2)

Module size 6 genes

NF 0.11

%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.88 Contig4810_at Contig4810 - - 2e-2 At4g00750 dehydration-responsive family protein O.I. H.G. S.X.
0.77 90.8 0.82 Contig4811_at Contig4811 - - 5e-3 At2g45750 dehydration-responsive family protein O.I. H.G. S.X.
0.46 61.0 0.88 Contig2858_s_at Contig2858 - - 1e-3 At1g66680 AR401 O.I. H.G. S.X.
0.38 49.5 0.86 Contig1237_s_at Contig1237 aquaporin - 1e-30 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) O.I. H.G. S.X.
0.08 6.5 0.90 Contig3050_at Contig3050 - - 2e-3 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.
0.03 2.6 0.87 Contig6730_at Contig6730 - - 1e+0 At3g10815 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.84	HI02P10u_at	HI02P10u	-	-	2e-1	At5g28950	unknown protein	O.I.	H.G.	S.X.
0.48	63.2	0.82	Contig2857_at	Contig2857	-	-	4e-3	At1g66680	AR401	O.I.	H.G.	S.X.
0.44	58.9	0.89	Contig14688_s_at	Contig14688	-	-	7e-2	At3g27560	ATN1	O.I.	H.G.	S.X.
0.42	55.2	0.84	Contig14526_at	Contig14526	-	-	2e-16	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	O.I.	H.G.	S.X.
0.29	35.5	0.81	Contig17325_s_at	Contig17325	-	-	1e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.85	Contig5723_at	Contig5723	-	-	5e-3	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	O.I.	H.G.	S.X.
0.22	24.2	0.89	Contig9130_at	Contig9130	-	-	2e-4	At1g01940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.
0.16	15.3	0.82	Contig8642_at	Contig8642	-	-	3e-3	At3g04730	IAA16	O.I.	H.G.	S.X.
0.15	14.1	0.87	Contig14490_at	Contig14490	-	-	1e+0	At5g17810	WOX12 (WUSCHEL related homeobox 12)	O.I.	H.G.	S.X.
0.13	11.6	0.86	Contig5239_at	Contig5239	-	-	1e-9	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.7 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5 96.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.2 94.3 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1 94.1 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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