Co-expression analysis

Gene ID Contig4810_at
Gene name
Homology with ArabidopsisSimilar to At4g00750: dehydration-responsive family protein (HF=2e-2)
Module size 6 genes
NF 0.11
%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.88Contig4810_atContig4810--2e-2At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.7790.80.82Contig4811_atContig4811--5e-3At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.4661.00.88Contig2858_s_atContig2858--1e-3At1g66680AR401O.I.H.G.S.X.
0.3849.50.86Contig1237_s_atContig1237aquaporin-1e-30At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.
0.086.50.90Contig3050_atContig3050--2e-3At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.032.60.87Contig6730_atContig6730--1e+0At3g10815zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.296.3GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.294.3GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.194.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1607184_at, orthologous to the query gene, Contig4810_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8895.41607184_atAt4g00750hypothetical protein LOC100258938-8e-24At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.5679.41617012_atAt4g00750hypothetical protein LOC100252609-1e-17At5g25190ethylene-responsive element-binding protein, putativeO.I.H.G.S.X.
0.5679.41620347_atAt4g00750hypothetical protein LOC100245312-1e-13At3g10320transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.5679.41621034_atAt4g00750hypothetical protein LOC100244738 /// similar to phosphoenolpyruvate carboxykinase /// hypothetical protein LOC100257809-4e-110At4g37870PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1)O.I.H.G.S.X.
0.5679.41607883_atAt4g00750hypothetical protein LOC100255480-5e+0At5g49215glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.5072.71606879_atAt4g00750hypothetical protein LOC100257455-1e-7At2g2771060S acidic ribosomal protein P2 (RPP2B)O.I.H.G.S.X.
0.5072.71614863_atAt4g00750hypothetical protein LOC100251857-4e+0Atcg00710-O.I.H.G.S.X.
0.5072.71608366_atAt4g00750hypothetical protein LOC100250312-1e+0At5g12230unknown proteinO.I.H.G.S.X.
0.4868.81621490_atAt4g00750hypothetical protein LOC100256024-4e-3At5g48350nucleic acid bindingO.I.H.G.S.X.
0.4767.71615257_atAt4g00750hexose transporter-like-6e-12At4g35300TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)O.I.H.G.S.X.
0.4666.51610428_atAt4g00750hypothetical protein LOC100263040-2e-4At1g32090early-responsive to dehydration protein-related / ERD protein-relatedO.I.H.G.S.X.
0.4564.61607476_atAt4g00750hypothetical protein LOC100258727-4e-14At3g08860alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putativeO.I.H.G.S.X.
0.4158.71607967_atAt4g00750hypothetical protein LOC100261140-4e-1At3g24860hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4057.71612363_atAt4g00750hypothetical protein LOC100262328-1e-28At3g58060cation efflux family protein / metal tolerance protein, putative (MTPc3)O.I.H.G.S.X.
0.4057.71622096_atAt4g00750hypothetical protein LOC100243077-4e+0At3g21490copper-binding family proteinO.I.H.G.S.X.
0.3853.61611309_atAt4g00750hypothetical protein LOC100255535-5e+0At3g03900adenylylsulfate kinase, putativeO.I.H.G.S.X.
0.3853.61609429_atAt4g00750hypothetical protein LOC100255607-7e-9At4g25433peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.3853.61618401_atAt4g00750hypothetical protein LOC100255480-6e-19At2g47010unknown proteinO.I.H.G.S.X.
0.3853.61619862_atAt4g00750hypothetical protein LOC100251016-3e-1At4g32470ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.3853.61614444_atAt4g00750hypothetical protein LOC100248687-1e+0At1g49650cell death associated protein-relatedO.I.H.G.S.X.
0.3548.51615255_atAt4g00750--4e+0At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.3345.71615630_atAt4g00750hypothetical protein LOC100250058-4e-1At1g26930kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2837.71618595_atAt4g00750hypothetical protein LOC100248440-5e-1At4g10950GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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