Co-expression analysis

Gene ID	Contig4810_at
Gene name
Homology with Arabidopsis	Similar to At4g00750: dehydration-responsive family protein (HF=2e-2)
Module size	6 genes
NF	0.11
%ile	13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.88	Contig4810_at	Contig4810	-	-	2e-2	At4g00750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.82	Contig4811_at	Contig4811	-	-	5e-3	At2g45750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.88	Contig2858_s_at	Contig2858	-	-	1e-3	At1g66680	AR401	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.86	Contig1237_s_at	Contig1237	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.90	Contig3050_at	Contig3050	-	-	2e-3	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.87	Contig6730_at	Contig6730	-	-	1e+0	At3g10815	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.2	94.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5430.2.S1_x_at, orthologous to the query gene, Contig4810_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	Ta.5430.2.S1_x_at	At4g00750	-	-	3e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.16044.1.S1_at	At4g00750	-	-	3e+0	At3g16570	RALFL23 (ralf-like 23)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.6262.2.S1_x_at	At4g00750	-	-	9e-34	At1g15500	ATNTT2	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.5430.2.S1_at	At4g00750	-	-	3e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.5430.1.S1_a_at	At4g00750	-	-	5e-5	At4g00750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.6262.2.S1_a_at	At4g00750	-	-	9e-34	At1g15500	ATNTT2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage