Co-expression analysis

Gene ID Contig4810_at
Gene name
Homology with ArabidopsisSimilar to At4g00750: dehydration-responsive family protein (HF=2e-2)
Module size 6 genes
NF 0.11
%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.88Contig4810_atContig4810--2e-2At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.7790.80.82Contig4811_atContig4811--5e-3At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.4661.00.88Contig2858_s_atContig2858--1e-3At1g66680AR401O.I.H.G.S.X.
0.3849.50.86Contig1237_s_atContig1237aquaporin-1e-30At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.
0.086.50.90Contig3050_atContig3050--2e-3At2g47710universal stress protein (USP) family proteinO.I.H.G.S.X.
0.032.60.87Contig6730_atContig6730--1e+0At3g10815zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.296.3GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.196.2GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.294.3GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.194.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211498.1.S1_s_at, orthologous to the query gene, Contig4810_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5984.9PtpAffx.211498.1.S1_s_atAt4g00750hypothetical protein-1e-15At2g45750dehydration-responsive family proteinO.I.H.G.S.X.
0.6086.0PtpAffx.30698.1.S1_atAt4g00750hypothetical protein-2e-3At1g73000-O.I.H.G.S.X.
0.5884.2Ptp.3084.1.S1_s_atAt4g00750hypothetical protein-3e-5At2g01660PDLP6 (PLASMODESMATA-LOCATED PROTEIN 6)O.I.H.G.S.X.
0.3559.7Ptp.6417.1.S1_s_atAt4g00750hypothetical protein-1e-1At3g54120reticulon family protein (RTNLB12)O.I.H.G.S.X.
0.2950.5PtpAffx.208425.1.S1_atAt4g00750hypothetical protein-6e-66At5g18500protein kinase family proteinO.I.H.G.S.X.
0.2747.1Ptp.2691.2.S1_atAt4g00750hypothetical protein-7e-56At5g13420transaldolase, putativeO.I.H.G.S.X.
0.2645.2Ptp.7924.1.S1_atAt4g00750--1e+0At1g32520unknown proteinO.I.H.G.S.X.
0.2136.5PtpAffx.155797.1.S1_atAt4g00750hypothetical protein-1e+0At2g28625unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.202218.1.S1_s_atAt4g00750hypothetical protein-2e-5At4g00440unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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