CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4810_at

Gene name
Homology with Arabidopsis Similar to At4g00750: dehydration-responsive family protein (HF=2e-2)

Module size 6 genes

NF 0.11

%ile 13.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.88 Contig4810_at Contig4810 - - 2e-2 At4g00750 dehydration-responsive family protein O.I. H.G. S.X.
0.77 90.8 0.82 Contig4811_at Contig4811 - - 5e-3 At2g45750 dehydration-responsive family protein O.I. H.G. S.X.
0.46 61.0 0.88 Contig2858_s_at Contig2858 - - 1e-3 At1g66680 AR401 O.I. H.G. S.X.
0.38 49.5 0.86 Contig1237_s_at Contig1237 aquaporin - 1e-30 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) O.I. H.G. S.X.
0.08 6.5 0.90 Contig3050_at Contig3050 - - 2e-3 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.
0.03 2.6 0.87 Contig6730_at Contig6730 - - 1e+0 At3g10815 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.7 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5 96.7 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2 96.3 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4 94.8 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
3.2 94.3 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1 94.1 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

A co-expression module including the rice gene, Os04g0570800, orthologous to the query gene, Contig4810_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os04g0570800 At4g00750 - Putative methyltransferase DUF248 family protein 1e-4 At4g00750 dehydration-responsive family protein O.I. H.G. S.X.
0.50 68.0 Os06g0566500 At4g00750 - Hypothetical protein 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.46 60.9 Os04g0563000 At4g00750 - Conserved hypothetical protein 2e+0 At5g63595 FLS4 (FLAVONOL SYNTHASE 4) O.I. H.G. S.X.
0.40 51.1 Os01g0243400 At4g00750 - Hypothetical protein 1e+0 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) O.I. H.G. S.X.
0.18 13.7 Os10g0479900 At4g00750 - Transcriptional factor B3 family protein 1e-6 At2g28350 ARF10 (AUXIN RESPONSE FACTOR 10) O.I. H.G. S.X.
0.15 10.3 Os05g0272900 At4g00750 - B-cell receptor-associated 31-like family protein 1e-1 At1g11905 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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