Co-expression analysis

Gene ID Contig4809_at
Gene name
Homology with ArabidopsisSimilar to At1g64370: unknown protein (HF=9e-2)
Module size 6 genes
NF 0.60
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.89Contig4809_atContig4809--9e-2At1g64370unknown proteinO.I.H.G.S.X.
0.6784.70.89Contig3301_s_atContig3301--7e-1At1g08660glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.6784.70.91HF11O19r_atHF11O19r--8e-5At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.5774.90.90Contig18125_atContig18125--2e-6At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4661.00.90Contig2878_atContig2878--4e-1At3g496302-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.4053.10.89Contig17801_atContig17801--1e+0At4g36620zinc finger (GATA type) family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7589.50.84EBem04_SQ002_C07_s_atEBem04_SQ002_C07--3e+0At5g19151unknown proteinO.I.H.G.S.X.
0.6178.70.86Contig13424_atContig13424--2e+0At3g42310unknown proteinO.I.H.G.S.X.
0.5674.30.84rbags25g01_atrbags25g01--1e+0At5g22880HTB2O.I.H.G.S.X.
0.5572.00.83Contig1198_x_atContig1198--2e-54At4g38970fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.5369.70.84Contig15476_atContig15476--2e+0At1g48325Expressed proteinO.I.H.G.S.X.
0.4762.20.84rbags22m24_s_atrbags22m24--2e-2At2g30360SIP4 (SOS3-INTERACTING PROTEIN 4)O.I.H.G.S.X.
0.4356.40.84Contig15106_atContig15106--1e-2At3g04370PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)O.I.H.G.S.X.
0.4356.40.86Contig16896_atContig16896--4e+0At3g61900auxin-responsive family proteinO.I.H.G.S.X.
0.4053.10.81HVSMEk0009P03r2_atHVSMEk0009P03r2--5e-9At5g57140PAP28 (PURPLE ACID PHOSPHATASE 28)O.I.H.G.S.X.
0.3849.50.80Contig20437_atContig20437--8e+0At4g17760damaged DNA binding / exodeoxyribonuclease IIIO.I.H.G.S.X.
0.3849.50.87Contig6866_atContig6866--1e-2At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.3849.50.86Contig11308_atContig11308--1e-13At1g49430LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2)O.I.H.G.S.X.
0.3647.10.84HZ65M04r_atHZ65M04r--4e+0At3g06110MKP2 (MAPK PHOSPHATASE 2)O.I.H.G.S.X.
0.3647.10.88Contig8779_atContig8779--1e+1At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.3545.10.86HM10K10r_atHM10K10r--2e-2At3g10185-O.I.H.G.S.X.
0.3545.10.86Contig6718_s_atContig6718--1e-8At5g40550unknown proteinO.I.H.G.S.X.
0.3342.60.87Contig17816_s_atContig17816--6e-1At1g63910AtMYB103 (myb domain protein 103)O.I.H.G.S.X.
0.3342.60.87Contig11552_atContig11552--1e-13At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.3037.00.84Contig797_atContig797--2e+0At4g30064LCR61 (Low-molecular-weight cysteine-rich 61)O.I.H.G.S.X.
0.3037.00.88Contig5706_atContig5706cellulose synthase-like CslF6-8e-2At5g11600unknown proteinO.I.H.G.S.X.
0.2935.50.74Contig3_atContig3--5e+0At4g34135UGT73B2 (UDP-GLUCOSYLTRANSFERASE 73B2)O.I.H.G.S.X.
0.2935.50.88Contig4657_atContig4657--3e-5At1g23870ATTPS9O.I.H.G.S.X.
0.2732.10.87Contig10085_atContig10085--3e+0At5g17350unknown proteinO.I.H.G.S.X.
0.2732.10.88HV_CEb0011B08r2_atHV_CEb0011B08r2--4e+0At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.2732.10.90Contig20641_atContig20641--9e-1At5g01380transcription factorO.I.H.G.S.X.
0.2630.40.88Contig8778_s_atContig8778--2e-2At3g10185-O.I.H.G.S.X.
0.2630.40.81Contig14438_atContig14438--4e-1At5g38400unknown proteinO.I.H.G.S.X.
0.2528.90.78Contig2777_atContig2777--7e-93At1g0836060S ribosomal protein L10A (RPL10aA)O.I.H.G.S.X.
0.2528.90.81HM02B09u_atHM02B09u--9e-1At4g05070unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.298.7GSM372954genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
6.698.2GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.997.9GSM372953genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.596.7GSM372951genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM372973genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.895.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM372972genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372969genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.595.1GSM372952genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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