Co-expression analysis

Gene ID	Contig4808_s_at
Gene name
Homology with Arabidopsis	Similar to At1g54410: dehydrin family protein (HF=2e-1)
Module size	6 genes
NF	0.44
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig4808_s_at	Contig4808	-	-	2e-1	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig13833_at	Contig13833	-	-	7e+0	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig2665_s_at	Contig2665	-	-	6e-62	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	HV05G21u_at	HV05G21u	-	-	1e+1	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	HVSMEb0008M09r2_at	HVSMEb0008M09r2	-	-	1e-6	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig13291_s_at	Contig13291	-	-	5e-1	At2g30340	LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.5	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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