Co-expression analysis

Gene ID Contig4806_at
Gene name
Homology with ArabidopsisSimilar to At4g08685: SAH7 (HF=4e-1)
Module size 13 genes
NF 0.34
%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.95Contig4806_atContig4806--4e-1At4g08685SAH7O.I.H.G.S.X.
0.4863.20.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.4762.20.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.4661.00.96Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.3545.10.96Contig6232_atContig6232--8e-1At2g01720ribophorin I family proteinO.I.H.G.S.X.
0.3342.60.96Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2935.50.95HU02A01u_s_atHU02A01u--4e+0At5g60330unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig8195_atContig8195--4e-90At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.2630.40.97Contig11464_atContig11464--6e-20At1g55740AtSIP1 (Arabidopsis thaliana seed imbibition 1)O.I.H.G.S.X.
0.2528.90.96Contig8415_atContig8415--2e-5At2g33510protein bindingO.I.H.G.S.X.
0.2326.10.97Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.1615.30.96Contig5664_atContig5664--1e-2At1g25450KCS5 (3-KETOACYL-COA SYNTHASE 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.2GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.695.3GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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